| Plasmid name |
Record number |
Other names |
Vector |
Purpose and notes |
Antisense |
| a-tubulin |
269 |
alpha tubulin |
pCMV-SPORT6.1 |
BC061297
Xenopus tropicalis tubulin, alpha 1, mRNA (cDNA clone MGC:75767 IMAGE:5381815), complete cds
gi|38511929|gb|BC061297.1|[38511929]
internal RI/notI site
|
|
| a1-ATPasea |
250 |
a1-ATPase alpha1-ATPase Na/K ATPase a1 subunit endoderm |
pCMV-SPORT6.1 |
dbEST Id: 19434432
EST name: AGENCOURT_15040604
GenBank Acc: CF220660
GenBank gi: 33421368
CLONE INFO
Clone Id: IMAGE:6988026 (5') |
KpnI/T7* |
| Activin beta b subunit |
196 |
activin |
CS107 |
Tneu142F12 |
|
| ADMP1 |
304 |
ADMP CS107 |
CS107 |
prepped version of clone Tgas066c03
sequenced 6/24/05
Do NOT use:
Ecor1
bamH1
hindIII
XbaI
|
T7 Cla1 |
| ADMP1/pcmv |
305 |
|
pCMV Sport 6.1 |
sequence confirmed 6/24/05
prep of Image clone 6990706, intended for subcloning into CS108 for probe/mRNA
can also use record #304 for same purpose
|
|
| ADMP2 |
290 |
ADMP2 CS107 |
CS107 |
this is a prep from ordered clone number Tneu087d02.
sequence verified
in situ pattern is faint; anterior neural.
|
T7/BamH1 |
| alpha tubulin |
181 |
tubulin a-tubulin alpha tubulin |
pCMV-sport6.1 |
>gi|33245881|gb|CF149613.1|CF149613 AGENCOURT_14929401 NICHD_XGC_Emb7 Silurana tropicalis cDNA clone
IMAGE:6980422 5'.
We thought this was gridlock but seq. confirms that it is tubulin |
kpnI/T7 |
| ap2 |
210 |
ap2 ap-2 |
CS107 |
Tgas030K20 |
claI/T7 |
| Axial protocadherin |
137 |
apc axial protocadherin |
CS107 |
Tegg092J24
3' end not all there |
EcoRI/T7* |
| Axial protocadherin |
139 |
apc axial protocadherin |
CS107 |
Tegg017F14 |
EcoRI/T7 |
| Axin related |
199 |
axin related |
CS107 |
Tneu129J09
The first few nucleotides may be missing in this clone - just short of full length |
|
| BAMBI |
195 |
bambi |
CS107 |
Tegg028M12 |
T7/ClaI* |
| BAMBI |
198 |
|
CS107 |
TEgg127M13 |
T7/ClaI |
| beta-catenin |
236 |
beta-catenin b-catenin catenin |
CS107 |
|
|
| BMP2 |
202 |
bmp2 bmp-2 bone morphogenetic protein 2 |
CS107 |
Tegg105I19 |
T7/ClaI* |
| BMP2 |
207 |
bmp2 bmp-2 |
CS107 |
Tgas025A06 |
|
| BMP4 |
193 |
bmp-4 bmp4 bone morphogenetic protein4 |
CS107 |
Tneu045C17
This clone has a very short insert. |
T7/ClaI |
| BMP4 |
194 |
bmp-4 bmp4 bone morphogenetic protein4 |
CS107 |
Tneu059F22
This clone also has a very short insert |
T7/ClaI |
| BMP4 |
212 |
bmp 4 bmp-4 bmp4 bone morphogenetic protein |
CS107 |
Tneu015d14 |
claI/t7 |
| bmp4 |
231 |
bmp4 bmp-4 bone morphogenetic protein |
CS107 |
Tgas125E13 |
claI/T7 |
| BMP7 |
61 |
BMP BMP-7 BMP7 bmp7 bmp-7 bmp-7R |
CS107 |
Genbank ID#BG514944
bamH1 (t7) ok as well - NOT hind III
*this clone has been tested and works for in situ
This clone encodes a protein more similar to "BMP-7R" of X. laevis than to "BMP-7," see Wang et al. 1997, Genes and Function for comparison of proteins.
see also clone 306 "BMP7-new" |
RI/T7* |
| BMP7 new |
306 |
BMP7 pCMV, |
pCMV sport 6.1 |
prepped version of IMAGE 5384686.
this is a better match to the "real" BMP7 (see Wang, Moos 1997, Genes and Function) than our clone #61 BMP7 (BMP7R).
This has been CS110K, record #310, but 306 also makes a fine probe
sequence confirmed 6/24/05
do NOT use Ecor1 |
T7/kpn1 |
| BMP7-CS110K |
310 |
BMP7 |
CS110K |
this is the "real" BMP7 of record 306 subcloned into Maura's 110K vector.
Kanamycin selection!!
do not use not1
do not use
(some restriction sites are inverted vs. record 306 following recombination reaction) |
T7 |
| C3 |
246 |
Complement C3 edoderm |
pCMV-SPORT6.1 |
dbEST Id: 19453773
EST name: AGENCOURT_15100521
GenBank Acc: CF239870
GenBank gi: 33443078
CLONE INFO
Clone Id: IMAGE:6994794 (5') |
|
| Cart-1 |
291 |
cart1 cart-1 cartilage |
pCMVsport6 |
LOCUS CX939893 849 bp mRNA linear EST 07-FEB-2005
DEFINITION JGI_CAAO6836.fwd NIH_XGC_tropTe5 Xenopus tropicalis cDNA clone
IMAGE:7703480 5', mRNA sequence.
ACCESSION CX939893
VERSION CX939893.1 GI:58729651
Site_1: SalI; Site_2: NotI; |
KpnI/T7 |
| Cerberus |
21 |
Cerberus cerberus |
CS107 |
LIG10F05
AL638969 |
T7/BamH1 *(not Ecor1) |
| Cerberus |
36 |
cerberus Cerberus CERBERUS |
CS107 |
Tgas016C17 |
T7 BamH1 (not Ecor1) |
| Ches1 |
163 |
fkhd forkhead fox ches1 FoxN3 |
CS107 |
Tgas027E12 |
|
| Chito |
242 |
Chito endoderm Glycosyl hydrolases / di-N-acetylchitobiase |
pExpress-1 |
dbEST Id: 19634136
EST name: AGENCOURT_15324914
GenBank Acc: CF375459
GenBank gi: 34312903
CLONE INFO
Clone Id: IMAGE:7007227 (5')
For vector information see
http://zgc.nci.nih.gov/Vectors/vec_pexpress-1
For probe XmaI,EcoRI, RsrII T7 |
|
| Chordin |
1 |
Chordin chordin |
CS107 |
Tgas122K5 |
|
| Chordin |
3 |
Chordin chordin |
CS107 |
Tgas133K5 |
T7 Ecor1 |
| Chordin |
4 |
Chordin chordin |
CS107 |
Tgas083F21 |
T7 Ecor1 |
| Chordin |
6 |
Chordin chordin |
CS107 |
Tneu011C22 |
T7 Ecor1* |
| Chordin |
7 |
Chordin chordin |
CS107 |
Tneu140P12 |
T7 Ecor1 |
| Chordin |
13 |
Chordin chordin |
CS107 |
Tneu029D7 |
T7 not R1 - use Bamh1 |
| Chordin |
14 |
Chordin chordin |
CS107 |
Tneu033C4 |
T7 Ecor1 |
| Chordin |
16 |
Chordin chordin |
CS107 |
Tneu005F12 |
T7 Ecor1 |
| Chordin |
19 |
Chordin chordin |
CS107 |
Tneu080L20 |
T7 Ecor1 |
| Churchill |
222 |
churchill |
CS107 |
TTpA047h20 |
BamHI/T7* |
| Collagen A Type II |
288 |
Collagen II A |
pCMV-SPORT6.1 |
ACCESSION BC063191
full length sequence available |
AgeI/T7 |
| Coronin |
55 |
coronin |
CS107 |
Genbank ID# BG512194
dad26g11.y1 Wellcome CRC pCS107 tropicalis St10-12 Silurana tropicalis cDNA clone IMAGE:4440788 5' similar to TR:Q9PWG8 Q9PWG8 CORONIN HOMOLOG. ;, MRNA sequence |
|
| cpl1 |
235 |
cpl1 cpl-1 lipocalin |
CS107 |
Cloned into assymetric SfI I sites. 5' EcorI NotI 3'
for probes linearize with EcoRI or Kpn I |
T7/KpnI |
| Crescent |
150 |
crescent frzb2 frzb-2 |
CS107 |
Tneu117G19 |
claI/T7 |
| Crescent |
151 |
crescent frzb2 frzb-2 |
CS107 |
Tneu018n22
3' end appears to be chimeric with translation initiation factor |
|
| Crescent |
152 |
crescent frzb2 frzb-2 |
CS107 |
Tneu142G13 |
|
| cytokeratin |
270 |
cytokeratin epidermal keratin |
pCMV-SPORT6.1 |
EST name: AGENCOURT_15113715
GenBank Acc: CF240450
GenBank gi: 33443658
CLONE INFO
Clone Id: IMAGE:6991625 (3') |
EcoRI/T7 |
| cytokeratin |
271 |
cytokeratin epidermal keratin |
pCMV-SPORT6.1 |
dbEST Id: 19309082
EST name: AGENCOURT_14905694
GenBank Acc: CF152092
GenBank gi: 33248600
CLONE INFO
Clone Id: IMAGE:6984581 (5') |
|
| Dazap2 |
96 |
Dazap-2 dazap2 proline-rich protein, 81E10 |
CS107 |
|
ClaI/T7 |
| delta |
281 |
delta |
sport6 |
Image clone 6988912 |
t7/kpn1 |
| derriere |
69 |
derriere |
CS107 |
Tgas141F11
*tested for in situ - works |
RI/T7* |
| DG42 |
247 |
Hyaluronan synthase 1 DG42 endoderm |
pCMV-SPORT6.1 |
dbEST Id: 19434270
EST name: AGENCOURT_15041124
GenBank Acc: CF220501
GenBank gi: 33421209
CLONE INFO
Clone Id: IMAGE:6988222 (5') |
|
| dHAND |
277 |
dHAND |
pCMV-SPORT6.1 |
EST name: AGENCOURT_14980561
GenBank Acc: CF218564
GenBank gi: 33419272
CLONE INFO
Clone Id: IMAGE:6989521 (5') |
|
| Dickkopf-1 |
2 |
Dickkopf-1 dickkopf1 dkk |
CS107 |
Tgas131C10 |
T7/R1*
BamH1 and HindIII ok too |
| DLL2 |
120 |
xdll2 dll DLL |
CS107 |
Likely have 3'
Don't have 5'
TGAS040e17 |
|
| dll2 |
125 |
dll-2 DLL xdll2 |
CS107 |
no 5'
3' - not sure
TNeu022006 |
claI/T7 |
| DLL3 |
116 |
dll3 dll |
CS107 |
don't have 5'
TNeu139d17 |
claI/T7 |
| dlx2 |
307 |
dlx-2 |
pCMV-SPORT6.1 |
LOCUS NM_001008060 2508 bp DEFINITION Xenopus tropicalis dlx2-prov protein (dlx2-prov), mRNA.
ERSION NM_001008060.1 GI:56118495
LOCUS BC080947 2508 bp mRNA linear VRT 08-MAR-2005
DEFINITION Xenopus tropicalis dlx2-prov protein, mRNA (cDNA clone MGC:79639
IMAGE:6980076), complete cds.
ACCESSION BC080947 GI:51704086
Vector: pCMV-SPORT6.1; Site_1: NotI; Site_2: EcoRV; |
|
| EF1alpha |
103 |
|
CS108 |
|
|
| Emx1 |
251 |
emx1 empty spiracles 1 forebrain |
pCMV-SPORT6.1 |
LOCUS BC074580 1377 bp mRNA linear VRT 25-JUN-2004
DEFINITION Xenopus tropicalis cDNA clone MGC:69381 IMAGE:5335247, complete
cds.
EST name: NISC_nl02b12.y1
GenBank Acc: BQ520008
GenBank gi: 21378877
CLONE INFO
Clone Id: IMAGE:5335247 (5' |
Kpn1/T7* |
| emx1 |
254 |
emx-1 emx1 |
CS107 |
TNeu052k18
gi|38337578|gb|BX688458.1|BX688458 BX688458 XGC-neurula
Xenopus tropicalis cDNA clone TNeu052k18 3', mRNA sequence |
|
| emx2 |
255 |
emx-2 emx2 |
CS107 |
I am not sure which one.
gi|48676054|gb|CR407807.1|CR407807 CR407807 XGC-tailbud
Xenopus tropicalis cDNA clone TTbA001k13 5', mRNA sequence
Query= gi|38311649|gb|AL789146.2|AL789146 AL789146 XGC-neurula
Xenopus tropicalis cDNA clone TNeu125h20 5', mRNA sequence |
claI/T7 |
| emx3 |
188 |
emx3 |
pCMV-sport6.1 |
uncertain if emx1 or emx2
AGENCOURT_15065581 NICHD_XGC_Emb7 Silurana tropicalis cDNA clone IMAGE:6978117 3', MRNA sequence
gi|33425498|gb|CF224790.1|[33425498]
AGENCOURT_15066333 NICHD_XGC_Emb7 Silurana tropicalis cDNA clone IMAGE:6978117 5', MRNA sequence
gi|33425497|gb|CF224789.1|[33425497]
|
Asp718/T7* |
| En-1 |
318 |
engrailed1 engrailed-1 en1 en-1 |
PCR2.1 topo |
~1000 bp PCR fragment was amplified and cloned using the TOPO TA kit into |
HindIII/T7 |
| En-2 |
154 |
engrailed-2 en2 |
pCRII-TOPO 3950 nt |
an en-2 probe was amplified using the primers TGGGGAAGGAGATGCTTTGC
and TGGGCTGCTGAGAGGTTTTG.
pCRII-Topo also has a kanR cassette.
|
speI/T7* |
| Endocut |
244 |
endocut Glutamate carboxypeptidase M20 endoderm |
pCMV-SPORT6.1 |
dbEST Id: 19435911
EST name: AGENCOURT_14995193
GenBank Acc: CF222137
GenBank gi: 33422845
CLONE INFO
Clone Id: IMAGE:6986243 (5') |
|
| Endodermin |
100 |
edd endodermin |
pCMV-SPORT6.ccdb |
dbEST Id: 12638199
EST name: NISC_no19b07.y1
GenBank Acc: BQ526904
GenBank gi: 21385773
CLONE INFO
Clone Id: IMAGE:5381340 (5')
Source: IMAGE Consortium, LLNL
|
|
| Endodermin |
109 |
endodermin, edd |
CS107 |
dbEST Id: 12638199
EST name: NISC_no19b07.y1
GenBank Acc: BQ526904
GenBank gi: 21385773
CLONE INFO
Clone Id: IMAGE:5381340 (5')
Source: IMAGE Consortium, LLNL
Plate: LLAM11971 Row: D Column: 13
|
|
| Endodermin |
219 |
endodermin |
pCMV-SPORT6.1 |
EST name: AGENCOURT_14928500
GenBank Acc: CF149137
GenBank gi: 33245405
CLONE INFO
Clone Id: IMAGE:6978356 (5')
antisense try RI or kpnI T7 |
|
| Endothelin-1 |
287 |
entdothelin-1 endothelin1 |
CS107 |
TTpa039J07 |
|
| Eomesodermin |
204 |
eomesodermin |
CS107 |
Tgas141F06 |
RI/T7* |
| Eomesodermin |
205 |
eomesodermin |
CS107 |
Tgas015D23
3' end gives no hits |
|
| Eph receptor tyrosine kinase |
186 |
eph |
CS107 |
TGas045P01 |
ClaI/T7 |
| EphB4 |
184 |
vascular ephb4 |
CS107 |
Tgas046K17 |
claI/T7* |
| EphB4 |
185 |
vascular ephb4 |
CS107 |
TNeu111K19 |
ClaI/T7 |
| Ephrin b2 |
237 |
ephrin b2 |
pCMV-SPORT6.1 |
dbEST Id: 12435154
EST name: NISC_mq12f01.y1
GenBank Acc: BQ390329
GenBank gi: 21078016
CLONE INFO
Clone Id: IMAGE:5308177 (5')
Source: IMAGE Consortium, LLNL
Plate: LLAM11780 Row: L Column: 2 |
|
| EphrinB2 |
179 |
ephrin ephrinB2 ephrin-B2 |
pCMV-sport6.1 |
NISC_mq03c02.y1 NICHD_XGC_Emb5 Silurana tropicalis cDNA clone IMAGE:5307266 5', MRNA sequence
gi|21076361|gb|BQ388674.1|[21076361]
NISC_mq03c02.x1 NICHD_XGC_Emb5 Silurana tropicalis cDNA clone IMAGE:5307266 3', MRNA sequence
gi|21076360|gb|BQ388673.1|[21076360]
|
Asp718/T7 |
| Epidermal Keratin |
101 |
epidermal keratin keratin epidermis |
CS108 |
insert cloned into sal I-Not I |
|
| esr4 |
70 |
ESR4 esr |
CS107 |
Likely have 3'
Don't have 5'
TNeu125H16 |
|
| ESR4 |
119 |
esr4 Esr4 |
CS107 |
5' not present
TNEU138e11 |
|
| Fast1 |
164 |
fkhd forkhead fox Fast1 FoxH3 |
CS107 |
Tegg015N21 |
|
| Fetuinish |
249 |
Fetuinish Cystatin protease inhibitor / Fetuin-b endoderm |
pExpress-1 |
dbEST Id: 19889197
EST name: AGENCOURT_15703449
GenBank Acc: CF593173
GenBank gi: 36346442
CLONE INFO
Clone Id: IMAGE:7025331 (5') |
|
| FGF-8 |
220 |
fgf-8 fgf8 fibroblast growth factor 8 fgf |
pCMV-SPORT6.1 |
dbEST Id: 19308323
EST name: AGENCOURT_14904188
GenBank Acc: CF151333
GenBank gi: 33247841
CLONE INFO
Clone Id: IMAGE:6983047 (5')
antisense try RI or kpnI T7 |
|
| FGF8 |
90 |
FGF8 fibroblast growth factor fgf-8 |
CS107 |
Tneu007i10 |
|
| FGF8 |
95 |
fgf-8 fgf8 fibroblast growth factor |
CS107 |
TNeu007I10
*Been tested and works on in situ |
T7/R1* |
| FGFR1 |
80 |
FGFR1 fibroblast growth factor receptor FGFR-1 |
CS107 |
Tneu049H18 |
|
| FGFR2 |
77 |
FGFR2 FGFR fibroblast growth factor receptor FGFR-2 |
CS107 |
Tgas066A10 |
|
| fgfr2 |
115 |
fibroblast growth factor receptor-2 fgfr |
CS107 |
AL637435
Don't have 5'
Clone Lig8c12 |
|
| fgfr2 |
122 |
fgfr2 fibroblast growth factor receptor 2 fgfr-2 |
CS107 |
No 5'
TGas066a10 |
|
| FGFR4a |
87 |
FGFR4a fibroblast growth factor receptor FGFR-4a |
CS107 |
Tgas028m19 |
|
| Fibronectin |
64 |
fibronectin |
CS107 |
Genbank accession #BG886270 |
|
| Fkh5 |
73 |
Fkh5 foxb1 forkhead5 forkhead-5 fkh-5 |
CS107 |
Tgas064p06 |
|
| Fkh5 |
84 |
Fkh5 forkhead5 forkhead-5 fkh-5 |
CS107 |
Tgas053m03 |
|
| Fkh6 |
83 |
fkh6 foxD3 forkhead6 forkhead-6 fkh-6 XFD6 |
CS107 |
Tgas035o17 |
|
| Fli |
302 |
fli vascular |
pCS108 |
DEFINITION JGI_XZT46477.fwd NIH_XGC_tropTad5 Xenopus tropicalis cDNA clone
IMAGE:7621709 5', mRNA sequence.
ACCESSION CX342033
VERSION CX342033.1 GI:57078505
Site_1: SalI; Site_2: NotI |
|
| flk-1 |
294 |
flk1 vasciular flk-1 |
pCS108 |
DEFINITION JGI_XZT45538.fwd NIH_XGC_tropTad5 Xenopus tropicalis cDNA clone
IMAGE:7620420 5', mRNA sequence.
ACCESSION CX341075
VERSION CX341075.1 GI:57077547
Site_1: SalI; Site_2: NotI; |
|
| follistatin |
68 |
follistatin |
CS107 |
dad17g05.y1 Wellcome CRC pCS107 tropicalis St10-12 Silurana tropicalis cDNA clone IMAGE:4439985 5' similar to TR:Q91376 Q91376 FOLLISTATIN. ;.
BG348597 |
T7 Bamh1*(not R1) |
| forkhead |
157 |
fkhd forkhead fox |
CS107 |
Tgas019F24
This clone has weak similarity to XFD2 (FoxI1a) |
|
| forkhead |
175 |
fkhd forkhead fox
|
CS107 |
Tgas019F21
weak similarity to XFD2 |
|
| Forkhead box I1 |
176 |
fkhd forkhead foxI1 |
pCMV-sport6.1 |
NISC_ng06a02.y1 NICHD_XGC_Emb6 Silurana tropicalis cDNA clone IMAGE:5382411 5', MRNA sequence
gi|21081568|gb|BQ393881.1|[21081568]
|
|
| Foxa2 |
136 |
fox foxa2 hnf3b hnf3beta hnf |
CS107 |
Tneu069I04 |
ClaI/T7* |
| FoxD3 |
216 |
foxd3 |
CS107 |
dbEST Id: 19434281
EST name: AGENCOURT_15040932
GenBank Acc: CF220512
GenBank gi: 33421220
CLONE INFO
Clone Id: IMAGE:6988210 (5' |
SalI/T7 |
| FoxI1 |
166 |
fkhd forkhead foxi1 XFD2 |
CS107 |
Tegg136P02 |
|
| FoxI1 |
171 |
fkhd forkhead foxI1 XFD2 |
CS107 |
Tneu084P05 |
|
| FoxI1a |
23 |
xFD2 fox FoxI1a |
CS107 |
Tneu012H23 |
T7 Ecor1 |
| FoxI1a |
32 |
xFD2 fox FoxI1a |
CS107 |
Tgas002H16
Maybe have 5' of gene also
*this clone has been tested and works for in situ |
T7 BamHI* |
| FoxI1c |
162 |
FoxI1c fkhd forkhead fox XFD10 |
CS107 |
Tgas113F01 |
|
| Foxi3 |
161 |
FoxI3 fkhd forkhead fox |
CS107 |
Tegg138H22
most similar to foxi3 |
|
| Foxi3 |
169 |
fkhd forkhead foxi3 |
CS107 |
Tegg020K15 |
|
| FoxJ1 |
173 |
fkhd forkhead foxJ1 |
pCMV-sport6.1 |
NISC_mq24c11.y1 NICHD_XGC_Emb5 Silurana tropicalis cDNA clone IMAGE:5309205 5', MRNA sequence
gi|21080102|gb|BQ392415.1|[21080102]
NISC_mq24c11.x1 NICHD_XGC_Emb5 Silurana tropicalis cDNA clone IMAGE:5309205 3', MRNA sequence
gi|21080101|gb|BQ392414.1|[21080101]
|
|
| FoxJ1 |
191 |
fkhd foxj1 |
pCMV-SPORT6.1 |
NISC_mq24c11.y1 NICHD_XGC_Emb5 Silurana tropicalis cDNA clone IMAGE:5309205 5', MRNA sequence
gi|21080102|gb|BQ392415.1|[21080102]
NISC_mq24c11.x1 NICHD_XGC_Emb5 Silurana tropicalis cDNA clone IMAGE:5309205 3', MRNA sequence
gi|21080101|gb|BQ392414.1|[21080101]
|
|
| FoxJ2 |
174 |
fkhd forkhead fox J2 |
pCMV-sport6.1 |
NISC_nl03a03.y1 NICHD_XGC_Emb7 Silurana tropicalis cDNA clone IMAGE:5335204 5', MRNA sequence
gi|21378989|gb|BQ520120.1|[21378989]
|
|
| FoxN4 |
172 |
fkhd forkhead foxN4 |
CS107 |
Tegg019G15 |
|
| Foxq1 |
167 |
fkhd forkhead foxq1 |
CS107 |
Tneu015L12 |
|
| Frzb |
65 |
Frzb |
CS107 |
Genbank Accession #BG886039
not BamH1 - HindIII or R1 OK |
RI/T7* |
| Frzb |
72 |
Frzb fzb |
CS107 |
Tgas069i22 |
|
| Frzb |
74 |
Fzb frzb |
CS107 |
Tneu037b10 |
|
| Fugacin |
53 |
fugacin xnr3 xnr nodal related 3 |
CS107 |
see Genbank ID# BG886280
dad51c07.x1 Wellcome CRC pCS107 tropicalis St10-12 Silurana tropicalis cDNA clone IMAGE:4462861 3' similar to TR:Q91621 Q91621 FUGACIN. ;, MRNA sequence
gi|14263370|gb|BG886280.1|[14263370] |
T7 Cla1 |
| Gata-4 |
258 |
gata4 gata-4 |
CS107 |
TGas120j19
gi|38703057|gb|AL960651.2|AL960651 AL960651 XGC-gastrula
Xenopus tropicalis cDNA clone TGas120j19 5
|
|
| Gata-4 |
259 |
gata4 gata-4 |
CS107 |
TGas112g01
gi|39015137|gb|AL963806.2|AL963806 AL963806 XGC-gastrula
Xenopus tropicalis cDNA clone TGas112g01 5', mRNA sequence |
|
| gata-5 |
245 |
gata5 gata-5 endoderm |
pCMV-SPORT6.1 |
dbEST Id: 19434277
EST name: AGENCOURT_15040996
GenBank Acc: CF220508
GenBank gi: 33421216
CLONE INFO
Clone Id: IMAGE:6988214 (5') |
|
| Gata-6 |
67 |
gata gata6 gata- 6 |
CS107 |
Genbank #BG885303 |
|
| Gata4 |
108 |
gata gata4 gata-4 |
CS107 |
TNeu111a24 |
BamHI/T7 |
| Gata6 |
110 |
gata gata-6 |
pCMV-sport6.1 |
dbEST Id: 12441064
EST name: NISC_ng19g04.y1
GenBank Acc: BQ396239
GenBank gi: 21083926
CLONE INFO
Clone Id: IMAGE:5383878 (5')
Source: IMAGE Consortium, LLNL
Plate: LLAM11977 Row: N Column: 7 |
KpnI/T7 |
| gata6 |
111 |
gata gata-6 |
pCMV-SPORT6.1 |
dbEST Id: 12440736
EST name: NISC_ng17h04.y1
GenBank Acc: BQ395911
GenBank gi: 21083598
CLONE INFO
Clone Id: IMAGE:5383902 (5')
Source: IMAGE Consortium, LLNL
Plate: LLAM11977 Row: O Column: 7
|
|
| Gata6 |
257 |
gata-6 gata6 |
pCMV-SPORT6.1 |
dbEST Id: 12441064
EST name: NISC_ng19g04.y1
GenBank Acc: BQ396239
GenBank gi: 21083926
CLONE INFO
Clone Id: IMAGE:5383878 (5') |
claI/T7 |
| Gata6 |
264 |
gata-6 gata6 |
pCMV-SPORT6.1 |
dbEST Id: 12440736
EST name: NISC_ng17h04.y1
GenBank Acc: BQ395911
GenBank gi: 21083598
CLONE INFO
Clone Id: IMAGE:5383902 (5') |
|
| Gbx 2 |
89 |
Gbx 2 gbx-2 gbx2 |
CS107 |
Tneu059g14 |
|
| Gbx2 |
82 |
Gbx-2 Gbx2 |
CS107 |
Tgas027p15 |
|
| gbx2 |
121 |
gbx2b gbx |
CS107 |
No 5'
Likely have 3'
TGas037A13
Probe Made* |
*ClaI/T7 |
| GDF6 CS107 |
289 |
GDF6 |
CS107 |
this is just a prepped version of clone Tgas137g21 from Russell's library.
sequence verified
In situ pattern matches published pattern for laevis (Chang and Hemmati-Brivanlou 1999), probe takes a couple days at 4 degrees to come up. |
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